[my mistake. disregard below.I forgot switched the file back to the original… I am retesting. I am leaving the info below so you can see how it was working.]
Note these are the two commands that I am running. Simply running archive.php twice but piping to two different log files.
[~]# /usr/bin/php /var/www/html/analytics/misc/cron/archive.php --url=http://ip removed/> /var/log/piwik-archive-1.log &
[~]# /usr/bin/php /var/www/html/analytics/misc/cron/archive.php --url=http://ip removed/> /var/log/piwik-archive-2.log &
[i]JOB #1
[2012-09-25 19:20:40] [15236f8c] START
[2012-09-25 19:20:40] [15236f8c] Starting Piwik reports archiving…
[2012-09-25 19:21:10] [15236f8c] Archived website id = 1, period = day, Time elapsed: 29.915s
[2012-09-25 19:21:57] [15236f8c] Archived website id = 1, period = week, 0 visits, Time elapsed: 46.379s
[2012-09-25 19:22:27] [15236f8c] Archived website id = 1, period = month, 0 visits, Time elapsed: 30.469s
[2012-09-25 19:22:48] [15236f8c] Archived website id = 1, period = year, 54 visits, Time elapsed: 21.174s
[2012-09-25 19:22:49] [15236f8c] Archived website id = 1, today = 0 visits, 4 API requests, Time elapsed: 128.489s [1/19760 done]
[2012-09-25 19:23:20] [15236f8c] Archived website id = 2, period = day, Time elapsed: 31.471s
[2012-09-25 19:23:31] [15236f8c] Archived website id = 2, period = week, 0 visits, Time elapsed: 10.659s
[2012-09-25 19:23:34] [15236f8c] Archived website id = 2, period = month, 0 visits, Time elapsed: 3.704s
[2012-09-25 19:23:37] [15236f8c] Archived website id = 2, period = year, 20 visits, Time elapsed: 2.058s
[2012-09-25 19:23:37] [15236f8c] Archived website id = 2, today = 0 visits, 4 API requests, Time elapsed: 47.896s [2/19760 done]
[2012-09-25 19:23:38] [15236f8c] Archived website id = 3, period = day, Time elapsed: 1.904s
[2012-09-25 19:23:52] [15236f8c] Archived website id = 3, period = week, 376 visits, Time elapsed: 13.855s
[2012-09-25 19:24:47] [15236f8c] Archived website id = 3, period = month, 15278 visits, Time elapsed: 55.118s
JOB#2
[2012-09-25 19:20:40] [41e0db5a] START
[2012-09-25 19:20:40] [41e0db5a] Starting Piwik reports archiving…
[2012-09-25 19:21:19] [41e0db5a] Archived website id = 1, period = day, Time elapsed: 39.122s
[2012-09-25 19:21:57] [41e0db5a] Archived website id = 1, period = week, 0 visits, Time elapsed: 37.178s
[2012-09-25 19:22:27] [41e0db5a] Archived website id = 1, period = month, 0 visits, Time elapsed: 30.678s
[2012-09-25 19:22:54] [41e0db5a] Archived website id = 1, period = year, 54 visits, Time elapsed: 26.574s
[2012-09-25 19:22:54] [41e0db5a] Archived website id = 1, today = 0 visits, 4 API requests, Time elapsed: 134.094s [1/19760 done]
[2012-09-25 19:23:21] [41e0db5a] Archived website id = 2, period = day, Time elapsed: 26.625s
[2012-09-25 19:23:23] [41e0db5a] Archived website id = 2, period = week, 0 visits, Time elapsed: 2.039s
[2012-09-25 19:23:34] [41e0db5a] Archived website id = 2, period = month, 0 visits, Time elapsed: 11.365s
[2012-09-25 19:23:37] [41e0db5a] Archived website id = 2, period = year, 20 visits, Time elapsed: 2.609s
[2012-09-25 19:23:37] [41e0db5a] Archived website id = 2, today = 0 visits, 4 API requests, Time elapsed: 42.645s [2/19760 done]
[2012-09-25 19:23:38] [41e0db5a] Archived website id = 3, period = day, Time elapsed: 1.539s
[2012-09-25 19:23:52] [41e0db5a] Archived website id = 3, period = week, 376 visits, Time elapsed: 13.860s
[2012-09-25 19:24:47] [41e0db5a] Archived website id = 3, period = month, 15278 visits, Time elapsed: 55.137s[/i]