"Files to delete" message still there

I quote from the Dev Log
There are several fixes to the Updater to make sure updating to Matomo 4.6.2 doesn’t result in the System Check message “Files to Delete”.
But here it is, the message again, mentioning files to delete whereas they are Matomo files which I assume must not be deleted.
Any light upon this?

Can you list the files here?

matomo-archive-output.log
misc/others/uninstall-delete-piwik-directory.php
package-lock.json
phpcs.xml
vendor/php-di/php-di/.gitstats.yml
vendor/php-di/php-di/.phpstorm.meta.php
vendor/twig/twig/.php_cs.dist